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Organic Chemistry

Paula Yurkanis Bruice

Chapter 26

The Organic Chemistry of the Metabolic Pathways - all with Video Answers

Educators


Chapter Questions

01:19

Problem 1

The $\beta$ -phosphorus of ATP has two phosphoanhydride linkages, but generally only the one linking the $\beta$ -phosphorus to the $\alpha$ -phosphorus is broken in a phosphoryl transfer reaction. Explain why the one linking the $\beta$ -phosphorus to the $\gamma$ -phosphorus is almost never broken.

Aditya Sood
Aditya Sood
Numerade Educator
03:42

Problem 2

ATP has $\mathrm{p} K_{\mathrm{a}}$ values of $0.9,1.5,2.3,$ and $7.7 ;$ ADP has $\mathrm{p} K_{\mathrm{a}}$ values of $0.9,2.8,$ and $6.8 ;$ and phosphoric acid has $\mathrm{p} K_{\mathrm{a}}$ values of $1.9,6.7,$ and 12.4 Do the calculation showing that at pH 7.3
a. the charge on ATP is $-3.3 .$
b. the charge on ADP is -2.8
c. the charge on phosphate is -1.8
Solution to 2a Because $\mathrm{pH} 7.3$ is much greater than the $\mathrm{p} K_{\mathrm{a}}$ values of the first three ionizations of ATP, we know that these three groups will be entirely in their basic forms at that pH, giving ATP three negative charges (Section 1.25 ). We need to determine what fraction of the group with a $\mathrm{p} K_{\mathrm{a}}$ value of 7.7 will be in its basic form at pH $7.3 .$
Because this equation has two unknowns. one of the unknowns must be expressed in terms of the other unknown. Using the definition of the acid dissociation constant $\left(K_{\mathrm{a}}\right),$ we can define [HA] in terms of $\left[\mathrm{A}^{-}\right], K_{\mathrm{a}},$ and $\left[\mathrm{H}^{+}\right]$ in order to have only one unknown.
Now we can calculate the fraction of the group with a $\mathrm{p} K_{\mathrm{a}}$ value of 7.7 that will be in the basic form. (Note that $K_{\mathrm{a}}$ is calculated from $\mathrm{p} K_{\mathrm{a}}$ and that $\left[\mathrm{H}^{+}\right]$ is calculated from pH.)
$$\frac{K_{\mathrm{a}}}{K_{\mathrm{a}}+\left[\mathrm{H}^{+}\right]}=\frac{2.0 \times 10^{-8}}{2.0 \times 10^{-8}+5.0 \times 10^{-8}}=0.3$$
Thus, the total negative charge on $\mathrm{ATP}=3.0+0.3=3.3$

Yokshitha Reddy Bathula
Yokshitha Reddy Bathula
Numerade Educator
01:49

Problem 3

Show the mechanism for the reaction of glycerol with ATP to form glycerol- 3 -phosphate.

Yokshitha Reddy Bathula
Yokshitha Reddy Bathula
Numerade Educator
01:05

Problem 4

The asymmetric center of glycerol- 3 -phosphate has the $R$ configuration. Draw the structure of (R)-glycerol-3-phosphate.

Yokshitha Reddy Bathula
Yokshitha Reddy Bathula
Numerade Educator
00:25

Problem 5

Why does the OH group add to the $\beta$ -carbon rather than to the $\alpha$ -carbon in the second reaction in the $\beta$ -oxidation of fats? (Hint: See Section 18.18 .)

Yokshitha Reddy Bathula
Yokshitha Reddy Bathula
Numerade Educator
00:57

Problem 6

Palmitic acid is a 16 -carbon saturated fatty acid. How many molecules of acetyl-CoA are formed from one molecule of palmitic acid?

Yokshitha Reddy Bathula
Yokshitha Reddy Bathula
Numerade Educator
00:38

Problem 7

How many molecules of NADH are formed from the $\beta$ -oxidation of one molecule of palmitic acid?

Yokshitha Reddy Bathula
Yokshitha Reddy Bathula
Numerade Educator
01:44

Problem 8

Propose a mechanism for the third reaction in glycolysis: formation of fructose-1,6-bisphosphate from the reaction of fructose- 6 -phosphate with ATP.

Yokshitha Reddy Bathula
Yokshitha Reddy Bathula
Numerade Educator
07:36

Problem 9

a. Which steps in glycolysis require ATP?
b. Which steps in glycolysis produce ATP?

Kadry Samuels
Kadry Samuels
Numerade Educator
00:42

Problem 10

How many molecules of $\mathrm{NAD}^{+}$ are required to convert one molecule of glucose to pyruvate?

Yokshitha Reddy Bathula
Yokshitha Reddy Bathula
Numerade Educator
01:35

Problem 11

What functional group of acetaldehyde is reduced when acetaldehyde is converted to ethanol?

rb
Rabia Bibi
Numerade Educator
02:43

Problem 12

Suggest a name for alcohol dehydrogenase that would refer to the forward reaction instead of to the reverse reaction.

Prashant Bana
Prashant Bana
Numerade Educator
00:59

Problem 13

What functional group of pyruvate is reduced when pyruvate is converted to lactate?

Prashant Bana
Prashant Bana
Numerade Educator
01:09

Problem 14

What coenzyme is required to convert pyruvate to acetaldehyde?

Prashant Bana
Prashant Bana
Numerade Educator
02:37

Problem 15

Propose a mechanism for the reduction of acetaldehyde by NADH to ethanol. (Hint: See Section 25.1.)

David Collins
David Collins
Numerade Educator
01:09

Problem 16

What coenzyme is required for transamination?

Prashant Bana
Prashant Bana
Numerade Educator
01:02

Problem 17

When the amino acid alanine undergoes transamination, what compound is formed?

Prashant Bana
Prashant Bana
Numerade Educator
02:10

Problem 18

What functional group of isocitrate is oxidized in the third reaction of the citric acid cycle?

Prashant Bana
Prashant Bana
Numerade Educator
00:28

Problem 19

The citric acid cycle is also called the tricarboxylic acid cycle. Which of the citric acid cycle intermediates are tricarboxylic acids?

Prashant Bana
Prashant Bana
Numerade Educator
07:15

Problem 20

What acyl group is transferred by thiamine pyrophosphate in the fourth reaction of the citric acid cycle?

Prashant Bana
Prashant Bana
Numerade Educator
02:38

Problem 21

Which of the eight enzymes in the citric acid cycle has a name that refers to the reverse reaction?

Ramesh Singh
Ramesh Singh
Numerade Educator
02:27

Problem 22

Indicate whether an anabolic pathway or a catabolic pathway does the following:
a. produces energy in the form of ATP
b. involves primarily oxidation reactions

Prashant Bana
Prashant Bana
Numerade Educator
02:04

Problem 23

Galactose can enter the glycolytic cycle but it must first react with ATP to form galactose-l-phosphate. Propose a mechanism for this reaction.

Mikayla Stephens
Mikayla Stephens
Numerade Educator
05:20

Problem 24

When pyruvate is reduced by NADH to lactate, which hydrogen in lactate comes from NADH?

Prashant Bana
Prashant Bana
Numerade Educator
03:33

Problem 25

What reactions in the citric acid cycle form a product with a new asymmetric center?

Aadit Sharma
Aadit Sharma
Numerade Educator
01:15

Problem 26

If the phosphorus atom in 3 -phosphoglycerate is radioactively labeled, where will the radioactive label be when the reaction that forms 2-phosphoglycerate is over?

Zulfiqar Ali
Zulfiqar Ali
Numerade Educator
02:38

Problem 27

What carbon atoms of glucose end up as a carboxyl group in pyruvate?

Pronoy Sinha
Pronoy Sinha
Numerade Educator
04:23

Problem 28

What carbon atoms of glucose end up in ethanol under anaerobic conditions in yeast?

Prashant Bana
Prashant Bana
Numerade Educator
00:51

Problem 29

How many molecules of acetyl-CoA are obtained from $\beta$ -oxidation of one molecule of a 16 -carbon saturated fatty acyl-CoA?

Prashant Bana
Prashant Bana
Numerade Educator
01:27

Problem 30

How many molecules of $\mathrm{CO}_{2}$ are obtained from the complete metabolism of one molecule of a 16 -carbon saturated fatty acyl-CoA?

Prashant Bana
Prashant Bana
Numerade Educator
00:51

Problem 31

How many molecules of ATP are obtained from $\beta$ -oxidation of one molecule of a 16 -carbon saturated fatty acyl-CoA?

Prashant Bana
Prashant Bana
Numerade Educator
00:53

Problem 32

How many molecules of NADH and FADH $_{2}$ are obtained from $\beta$ -oxidation of one molecule of a 16 -carbon saturated fatty acyl-CoA?

Prashant Bana
Prashant Bana
Numerade Educator
02:53

Problem 33

How many molecules of ATP are obtained from the NADH and FADH $_{2}$ formed in $\beta$ -oxidation of one molecule of a 16 -carbon saturated fatty acyl-CoA?

Prashant Bana
Prashant Bana
Numerade Educator
00:50

Problem 34

How many molecules of ATP are obtained from complete (including the fourth stage of catabolism) metabolism of one molecule of a 16-carbon saturated fatty acyl-CoA?

Prashant Bana
Prashant Bana
Numerade Educator
03:10

Problem 35

How many I from complete (including the fourth stage of catabolism) metabolism of one molecule of glucose?

Prashant Bana
Prashant Bana
Numerade Educator
01:01

Problem 36

Conjugate addition, like direct addition, can occur at the compound's $R e$ face or its $S i$ face (Section 18.14 ). Does attack of water occur at the $R e$ or $S$ i face of fumarate?

Narayan Hari
Narayan Hari
Numerade Educator
02:37

Problem 37

Most fatty acids have an even number of carbons and therefore are completely metabolized to acetyl-CoA. A fatty acid with an odd number of carbons is metabolized to acetyl-CoA and one equivalent of propionyl-CoA. The following two reactions convert propionyl-CoA into succinyl-CoA, a citric acid cycle intermediate, so it can be further metabolized. Each of the reactions requires a coenzyme. Identify the coenzyme for each step. From what vitamins are the coenzymes derived? (Hint: See Chapter $25 .$ )

Aadit Sharma
Aadit Sharma
Numerade Educator
02:28

Problem 38

If glucose is labeled with $^{14} \mathrm{C}$ in the indicated position, where will the label be in pyruvate?
a. $\quad g$ lucose $-1-^{14} C$
b. glucose- $2-^{14} \mathrm{C}$
c. glucose- $3-^{14} C$
d. glucose-4-"C
e. glucose- $5-^{14} C$
f. glucose- $6-^{14} C$

Aadit Sharma
Aadit Sharma
Numerade Educator
03:10

Problem 39

Isocitrate dehydrogenase, the enzyme that catalyzes the conversion of isocitrate to $\alpha$ -ketoglutarate in the citric acid cycle, requires an $\mathrm{Mn}^{2+}$ or $\mathrm{Mg}^{2+}$ cofactor. What role does the metal ion play in the reaction? (Hint: See Section 24.5.)

Pronoy Sinha
Pronoy Sinha
Numerade Educator
04:26

Problem 40

Under conditions of starvation, acetyl-CoA, instead of being degraded in the citric acid cycle, is converted into acctone and 3-hydroxybutyrate, compounds called ketone bodies that the brain can use as a temporary fuel. Propose a mechanism for their formation.

Lottie Adams
Lottie Adams
Numerade Educator
02:26

Problem 41

Acyl-CoA synthase is the enzyme that activates a fatty acid by converting it to a fatty acyl-CoA (Section 26.6 ) in a series of two reactions. In the first reaction, the fatty acid reacts with ATP, and one of the products formed is ADP. The other product reacts in a second reaction with CoASH to form the fatty acyl-CoA. Propose a mechanism for each of the reactions.

Shazia Naz
Shazia Naz
Numerade Educator
02:04

Problem 42

a. UDP-galactose-4-epimerase converts UDP-galactose to UDP-glucose. The reaction requires NAD $^{+}$ as a coenzyme. Propose a mechanism for the reaction.
b. Why is the enzyme called an epimerase?

Mikayla Stephens
Mikayla Stephens
Numerade Educator
07:02

Problem 43

A student is trying to determine the mechanism for a reaction that uses ATP to activate a carboxylate ion. Whether the carboxylate ion attacks the $\alpha$ -phosphorus or the $\beta$ -phosphorus of ATP cannot be determined from the reaction products because AMP and pyrophosphate are products in both reactions. However, the mechanisms can be distinguished by a labeling experiment in which the enzyme, the carboxylate ion, ATP, and radioactively labeled pyrophosphate are incubated, and ATP is isolated. If the isolated ATP is radioactive, attack occurred on the $\alpha$ -phosphorus. If it is not mdioactive, attack occurred on the $\beta$ -phosphorus. Explain these conclusions.

Niamat Khuda
Niamat Khuda
Numerade Educator
01:15

Problem 44

What would be the results of the experiment in Problem 43 if radioactive AMP were added to the incubation mixture instead of radioactive pyrophosphate?

Narayan Hari
Narayan Hari
Numerade Educator