Question
How many subunits does yeast RNA polymerase II have? Which of these are "core" subunits? How many subunits are common to all three nuclear RNA polymerases?
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Yeast RNA polymerase II is composed of 12 subunits. Show more…
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Consider the structure of the E. coli RNA polymerase core enzyme (not the holoenzyme). Answer the following questions: How many total subunits does the core enzyme contain? How many unique subunits does the core enzyme contain? How many different genes are necessary to encode for the core enzyme? The core enzyme associates with which protein to form the holoenzyme? Would this enzyme follow Beadle & Tatum's one gene, one enzyme model? (yes/no)
You have identified a mutation in yeast, a unicellular eukaryote, that prevents the capping of the $5^{\prime}$ end of the RNA transcript. However, much to your surprise, all the enzymes required for capping are normal. You determine that the mutation is, instead, in one of the subunits of RNA polymerase II. Which subunit is mutant, and how does this mutation result in failure to add a cap to yeast RNA?
RNA polymerase and ribosomes (a) If RNA polymerase subunits $\beta$ and $\beta^{\prime}$ together constitute approximately $0.5 \%$ of the total mass of protein in an $E .$ coli cell, how many RNA polymerase molecules are there per cell, assuming each $\beta$ and $\beta^{\prime}$ subunit within the cell is found in a complete RNA polymerase molecule? The subunits have a mass of 150 kDa each. (Adapted from Problem 4.1 of Schleif, $1993 .$ (b) Rifampin is an antibiotic used to treat Mycobacterium infections such as tuberculosis. It inhibits the initiation of transcription, but not the elongation of RNA transcripts. The time evolution of an $E .$ coli ribosomal RNA (rRNA) operon after addition of rifampin is shown in Figures $3.36(\mathrm{A})-(\mathrm{C})$ An operon is a collection of genes transcribed as a single unit. Use the figure to estimate the rate of transcript elongation. Use the beginning of the "Christmas-tree" morphology on the left of Figure $3.36(\mathrm{A})$ as the starting point for transcription. (c) Using the calculated elongation rate, estimate the frequency of initiation off of the rRNA operon. These genes are among the most transcribed in $E .$ coli. (d) As we saw in the chapter, a typical $E$. coli cell with a division time of 3000 s contains roughly 20,000 ribosomes. Assuming there is no ribosome degradation, how many RNA polymerase molecules must be synthesizing rRNA at any instant? What percentage of the RNA polymerase molecules in $E .$ coli are involved in transcribing rRNA genes?
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