Question

The image shows a tight grouping of specific amino acids that formed during protein folding. Based on the properties of these amino acids, what force likely accounts for this formation?

          The image shows a tight grouping of specific amino acids that formed during protein folding. Based on the properties of these amino acids, what force likely accounts for this formation?
        

Added by Jessica M.

Biology for AP Courses
Biology for AP Courses
Julianne Zedalis, John Eggebrecht
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The image shows a tight grouping of specific amino acids that formed during protein folding. Based on the properties of these amino acids, what force likely accounts for this formation?
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Transcript

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00:01 Okay, so in this question, we're given a few different functional groups and we're asked to determine not only where they come from, but also the type of interaction they can form.
00:07 All right, so the first one, notice that both of these things are the same, and they both come from cysteine.
00:14 So this is cysteine plus cysteine.
00:17 So the types of interactions they can form, and this is why cysteine is so interesting biochemically, is they can actually form covalent bonds called disulfide bridges.
00:26 So disulfide bridge is.
00:35 All right.
00:36 And those are actually very important to the structure of a lot of proteins.
00:39 All right.
00:39 So next we, for part b, we've got what looks like four carbons followed by a namine.
00:46 So that's going to be lysine.
00:48 With the second one, it's just going to be single carbon and then a carbaclyic acid group.
00:56 So that's going to be aspirate or aspartic acid.
01:02 So there are two main interactions that can go on here.
01:07 Notice that the lysine is protonated and the aspartic acid is deprotonated.
01:12 So obviously there can be acid interaction here where you have proton transfer.
01:18 But you can also have hydrogen bonding up here.
01:22 And the reason is that both nitrogen and oxygen are hydrogen bond.
01:29 Either donators or acceptors.
01:33 So either way, these things are going to interact relatively strongly.
01:39 So for c, we again have something that looks pretty similar to the second half of part b, and that's because they are similar...
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