1. Consider the following amino acid sequence that spontaneously folds into an $\alpha$-helix at pH 7.4 MEQISRLEKTNASDWVHFAL a. Identify all the electrostatic interactions between R groups in the $\alpha$-helix. Specify whether the interactions stabilize or destabilize the structure. b. The previous question assumes the $\alpha$-helix is at pH 7.4. Identify a range of pH values (e.g. 8-9) that would stabilize its three-dimensional structure. Briefly justify your answer in 1-2 sentences. hint: consider the ionization state of R groups
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** The amino acid sequence is MEQISRLEKTNASDWVHFAL. At pH 7.4, we need to consider the pKa values of the ionizable side chains. * **M (Methionine):** Non-ionizable side chain. * **E (Glutamic acid):** Carboxyl group, pKa ~4.25. At pH 7.4, it will be Show more…
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Josee P.
An a helix would be destabilized most by the presence of an Arg residue near the carboxyl terminus of the ́α helix the presence of two Lys residues near the amino terminus of the α helix interactions between neighboring Asp and Arg residues interactions between two adjacent hydrophobic Val residues an electric dipole spanning several peptide bonds throughout the α helix
Adi S.
Ion-ion interactions are particularly effective at stabilizing tertiary structures of proteins. Suggest a pair of amino acid residues that would be attracted to each other via ion-ion interactions at pH 7.4
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