Question
Describe the mechanism by which the $r p o H$ mRNA senses high temperature and turns on its own translation. What is the evidence for this model?
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The $rpoH$ gene encodes a heat shock sigma factor in bacteria, which is crucial for the expression of heat shock proteins that help the cell respond to stress caused by elevated temperatures. Show more…
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It has recently been discovered that under stress conditions, ribosomes can add amino acids onto the end of growing protein chains independently of mRNA. When translation stalls in eukaryotes, the small ribosomal subunit dissociates, taking the mRNA with it. The large subunit, containing the nascent peptide chain, binds two proteins called Rqc2 and Ltn1 which mediate direct recruitment of alanine and threonine charged tRNA, causing the peptide chain to continue growing by addition of alanine and threonine. Does this ability of the ribosome to add amino acids independently of mRNA argue against the RNA world hypothesis? Does the fact that this elongation is mRNAindependent mean that it is independent of all RNA? What challenges would a "protein world" scenario face compared to an RNA world, in terms of being able to propagate specific sequence information?
a. How many ribosomes are required (at a minimum) for the translation of $t r p E$ and $t r p C$ from a single transcript of the $t r p$ operon? b. How would you expect deletion of the two tryptophan codons in the RNA leader to affect the expression of the $t r p E$ and $t r p C$ genes?
One mechanism by which antisense RNAs act as negative regulators of gene expression is by base pairing with the ribosome binding site on the sense mRNA to block translation. In a second, alternative mechanism, the act of transcribing an antisense RNA can somehow prevent RNA polymerase from recognizing the sense promoter for the same gene. Design an experimental approach that would enable you to distinguish between these two modes of action at a specific gene. (Hint: What would be the outcome in each case if high levels of the antisense RNA were transcribed from a gene on a plasmid?)
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